About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91541675_91546672_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91541675 - 91546672
Intron Length:
4998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTCTTATACA
Flanking Amino Acid:
LEPLGETHHADFYGKPLPPL
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
74.8
30.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.4
0.73
0.9
77.3
35.4
Minor 5ss
39.7
-1.2
2.8
46.3
44.2
Minor BPS
57.1
0.22
2
73.19
38.6

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012180
91541598 - 91585246
43649