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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91541675_91547185_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91541675 - 91547185
Intron Length:
5511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTCTTATACA
Flanking Amino Acid:
IPTPPPSLPPDFYGKPLPPL
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.4
0.73
0.9
77.3
35.4
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
57.1
0.22
2
73.19
38.6

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019036
91541598 - 91585246
43649