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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91544880_91546672_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91544880 - 91546672
Intron Length:
1793

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTACGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TAGTCATTAAAC
Flanking Amino Acid:
LEPLGETHHAV*
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
74.8
30.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
81.6
29.2
Minor 5ss
39.7
-1.2
2.8
46.3
44.2
Minor BPS
62.3
0.37
1.7
70.56
40

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018920
91544839 - 91585246
40408