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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91547303_91547776_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91547303 - 91547776
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
CTGCTTGATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TAATGCTTTATT
Flanking Amino Acid:
EQQASESHDSDNSKKKNKKT
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
66.4
0.37
1
61.2
39.3
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
53.7
0.2
2.1
73.78
43.3

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019036
91541598 - 91585246
43649
ENSAPLT00000018920
91544839 - 91585246
40408
ENSAPLT00000012180
91541598 - 91585246
43649
ENSAPLT00000033972
91542775 - 91585246
42472