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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91548000_91548546_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91548000 - 91548546
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTATTCTCATTA
Flanking Amino Acid:
FQPIAAVISENEKQMEKKRL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73
31.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.1
0.56
0.9
75.7
33.9
Minor 5ss
35.8
-1.6
3.3
46.4
48.9
Minor BPS
53.9
0.12
1.8
68.01
38.7

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019036
91541598 - 91585246
43649
ENSAPLT00000018920
91544839 - 91585246
40408
ENSAPLT00000012180
91541598 - 91585246
43649
ENSAPLT00000033972
91542775 - 91585246
42472