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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91551158_91553866_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91551158 - 91553866
Intron Length:
2709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTGTATTTACAG
Flanking Amino Acid:
VNEHKCLCQIEPCSAVMGCG
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
85.6
30.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83
0.74
0.9
76.4
36.7
Minor 5ss
44.2
-0.6
2.9
66.4
38.5
Minor BPS
47.9
-0.3
1.9
57.17
44.4

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019036
91541598 - 91585246
43649
ENSAPLT00000018920
91544839 - 91585246
40408
ENSAPLT00000012180
91541598 - 91585246
43649
ENSAPLT00000033972
91542775 - 91585246
42472