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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91553973_91578510_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91553973 - 91578510
Intron Length:
24538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTATTTTGATT
Flanking Amino Acid:
SPKISGKPVLVLANKQDREG
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
83.8
34.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
43.7
-0.7
2.9
61.3
43
Minor BPS
62.1
0.46
1.2
74.35
37.2

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012180
91541598 - 91585246
43649
ENSAPLT00000033972
91542775 - 91585246
42472
ENSAPLT00000019036
91541598 - 91585246
43649
ENSAPLT00000018920
91544839 - 91585246
40408