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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91578761_91583588_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91578761 - 91583588
Intron Length:
4828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTCTTTGATC
Flanking Amino Acid:
KTATVRGIQGESPEDVAPTV
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
71.4
0.48
1
66.3
39.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
74.4
0.75
1.1
76.89
33.8

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033972
91542775 - 91585246
42472
ENSAPLT00000019036
91541598 - 91585246
43649
ENSAPLT00000018920
91544839 - 91585246
40408
ENSAPLT00000012180
91541598 - 91585246
43649