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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91583660_91585074_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
91583660 - 91585074
Intron Length:
1415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATG
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTATGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATGG
Flanking Amino Acid:
NWLKRWQEPVRKVTLIMVGL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
75.1
41.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
56.5
0.15
1.7
65.8
40
Minor 5ss
42.3
-0.8
3
56.9
47.4
Minor BPS
59.5
0.16
2
68.06
45.3

Associated Gene:

Gene:
ARL13B
Ensembl Gene ID:
ENSAPLG00000011691
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012180
91541598 - 91585246
43649
ENSAPLT00000033972
91542775 - 91585246
42472
ENSAPLT00000019036
91541598 - 91585246
43649
ENSAPLT00000018920
91544839 - 91585246
40408