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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91618788_91620352_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91618788 - 91620352
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTAC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
AACACCTTATCC
Flanking Amino Acid:
DVVTYLGGLPGASSATISVA
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
76.9
27.1
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
71.8
0.49
0.9
65.2
34.7
Minor 5ss
34.4
-1.8
2.9
42.9
44.7
Minor BPS
57.3
0.21
1.7
62.95
42.1

Associated Gene:

Gene:
PROS1
Ensembl Gene ID:
ENSAPLG00000011881
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012414
91589404 - 91620486
31083