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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91618788_91621598_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91618788 - 91621598
Intron Length:
2811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
CTTGCCCTAATT
Flanking Amino Acid:
DVVTYLGGLPDVPLGETLVT
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
76.9
27.1
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
81.5
0.71
0.9
77.1
37.1
Minor 5ss
34.4
-1.8
2.9
42.9
44.7
Minor BPS
62.7
0.48
1.8
80.27
42.1

Associated Gene:

Gene:
PROS1
Ensembl Gene ID:
ENSAPLG00000011881
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032302
91589404 - 91622548
33145