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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91804448_91815032_R

Intron Information:

Intron Rank:
151367
Intron Class:
major
Intron Phase:
Intron Coordinates:
91804448 - 91815032
Intron Length:
10585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTACCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TCCCCCTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82
0.72
0.8
73
37.2
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
64.5
0.53
1.7
77.05
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019224
91801988 - 91815198
13211