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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91847703_91862318_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
91847703 - 91862318
Intron Length:
14616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACATAT
5'SS Class:
major
3'SS Sequence:
TTTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGATCCATAACT
Flanking Amino Acid:
SLKIITNAAARPSNLLLDQS
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
73.8
33
Major BPS
100
1.24
0.5
100
0
Major PPT
91.5
0.93
0.7
89.9
24.7
Minor 5ss
39.7
-1.2
3.1
55.7
48.5
Minor BPS
73.5
0.82
1.6
87.34
37.3

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028546
91846012 - 92064434
218423
ENSAPLT00000023167
91846012 - 92050158
204147
ENSAPLT00000013203
91846012 - 92024675
178664
ENSAPLT00000037303
91846012 - 92050158
204147
ENSAPLT00000033391
91846012 - 92031948
185937