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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91875018_91877331_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91875018 - 91877331
Intron Length:
2314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GATCTCTGAAAT
Flanking Amino Acid:
ENGSLDSFLRKHDAQFTVIQ
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
35.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.4
0.55
1
70.2
44.7
Minor 5ss
32.5
-2
3.1
33.3
41.7
Minor BPS
54.5
0.22
1.6
70.07
39.7

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023167
91846012 - 92050158
204147
ENSAPLT00000013203
91846012 - 92024675
178664
ENSAPLT00000037303
91846012 - 92050158
204147
ENSAPLT00000033391
91846012 - 92031948
185937
ENSAPLT00000028546
91846012 - 92064434
218423