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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91877394_91882412_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91877394 - 91882412
Intron Length:
5019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTCATTTGAAAT
Flanking Amino Acid:
IIRLEGVVTKSKPVMIVTEY
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
80
0.68
0.9
73.7
40.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
52.2
0.15
1.6
70.27
40.6

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028546
91846012 - 92064434
218423
ENSAPLT00000023167
91846012 - 92050158
204147
ENSAPLT00000013203
91846012 - 92024675
178664
ENSAPLT00000037303
91846012 - 92050158
204147
ENSAPLT00000033391
91846012 - 92031948
185937