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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91894234_91896439_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91894234 - 91896439
Intron Length:
2206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
GTTAACTTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTGTGTTAACT
Flanking Amino Acid:
RKFEFETSPDSFSISSENSQ
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
78.3
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
1
66
44.8
Minor 5ss
51.2
0.04
2.5
74.5
35.3
Minor BPS
64.4
0.53
2.1
86.99
39.2

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028546
91846012 - 92064434
218423
ENSAPLT00000023167
91846012 - 92050158
204147
ENSAPLT00000013203
91846012 - 92024675
178664
ENSAPLT00000037303
91846012 - 92050158
204147
ENSAPLT00000033391
91846012 - 92031948
185937