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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91920917_91921432_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91920917 - 91921432
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
CACTACAGAAAA
Flanking Amino Acid:
EKDPPSMACTRPPSAPRNVI
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
61.1
0.28
1
67
29.8
Major PPT
88.1
0.86
0.6
84.7
22.9
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
42
-0.6
1.9
49.07
40.7

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028546
91846012 - 92064434
218423
ENSAPLT00000023167
91846012 - 92050158
204147
ENSAPLT00000013203
91846012 - 92024675
178664
ENSAPLT00000037303
91846012 - 92050158
204147
ENSAPLT00000033391
91846012 - 92031948
185937