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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91990162_91990242_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
91990162 - 91990242
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GCCGTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TGCCCTTTCACT
Flanking Amino Acid:
KGFYLAFQDVDTVPMDSQSL
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
72.4
39.2
Major BPS
77.7
0.69
1
81
30.2
Major PPT
70.9
0.47
1
60.5
44.8
Minor 5ss
29.8
-2.3
3.4
39.7
46.3
Minor BPS
58.1
0.34
1.8
73.8
43.1

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023167
91846012 - 92050158
204147