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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_91990649_92041549_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91990649 - 92041549
Intron Length:
50901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGATAT
U12 Branch Point Sequence:
ATTTCCTTTTTT
Flanking Amino Acid:
LGWISYPSHGWEEISGVDEH
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
33.1
Major BPS
49
-0
1.1
44.8
38.3
Major PPT
90.3
0.91
0.7
88.9
28.1
Minor 5ss
34.6
-1.8
2.7
33.3
41.7
Minor BPS
46.7
-0.1
3.6
82.11
39.4

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037303
91846012 - 92050158
204147
ENSAPLT00000028546
91846012 - 92064434
218423
ENSAPLT00000023167
91846012 - 92050158
204147