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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92041615_92050073_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92041615 - 92050073
Intron Length:
8459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGAAACTCATTC
Flanking Amino Acid:
ERPAYSGLLKVNLLDSKTIQ
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
84.7
0.78
0.7
80.8
31.2
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
42.8
-0.5
1.9
50.58
39.6

Associated Gene:

Gene:
EPHA3
Ensembl Gene ID:
ENSAPLG00000012538
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023167
91846012 - 92050158
204147
ENSAPLT00000037303
91846012 - 92050158
204147