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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92092805_92092889_R

Intron Information:

Intron Rank:
138574
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
92092805 - 92092889
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGAAGG
5'SS Class:
major
3'SS Sequence:
GAAATTCACTCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CATCTTGGAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.3
44.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
59.5
0.21
1
55.4
44.3
Minor 5ss
33.5
-1.9
3.1
40.1
39.9
Minor BPS
44.9
-0.3
2
62.67
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022035
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047353
92092590 - 92106143
13554