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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92238142_92250900_R

Intron Information:

Intron Rank:
136598
Intron Class:
major
Intron Phase:
Intron Coordinates:
92238142 - 92250900
Intron Length:
12759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
CATTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTGCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
77.8
38.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
81.7
34.2
Minor 5ss
39.4
-1.2
3.1
49.4
46.6
Minor BPS
53.6
0.11
2.2
70.44
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034865
92236949 - 92251138
14190