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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92252058_92252437_R

Intron Information:

Intron Rank:
136596
Intron Class:
major
Intron Phase:
Intron Coordinates:
92252058 - 92252437
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTATTT
5'SS Class:
major
3'SS Sequence:
TCTCCTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTCCTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
74.6
36.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.5
0.64
0.9
75.3
33.1
Minor 5ss
42.9
-0.8
3.4
65.4
45.7
Minor BPS
71.8
0.68
1.2
75.67
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017646
92250678 - 92252616
1939