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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92256690_92258564_R

Intron Information:

Intron Rank:
131436
Intron Class:
major
Intron Phase:
Intron Coordinates:
92256690 - 92258564
Intron Length:
1875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGATC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TTTTCTTTCAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
75.4
34.2
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
79.7
0.67
0.9
82
27.2
Minor 5ss
30.7
-2.2
3.3
42.1
45
Minor BPS
65.4
0.48
1.8
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026818
92256588 - 92258941
2354