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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92260491_92261308_R

Intron Information:

Intron Rank:
131435
Intron Class:
major
Intron Phase:
Intron Coordinates:
92260491 - 92261308
Intron Length:
818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78
38.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.4
0.71
0.8
76.7
31.8
Minor 5ss
42.5
-0.8
2.9
49.4
46.6
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024831
92257227 - 92261792
4566