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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92273612_92276582_R

Intron Information:

Intron Rank:
138950
Intron Class:
major
Intron Phase:
Intron Coordinates:
92273612 - 92276582
Intron Length:
2971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022257
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039748
92273378 - 92276829
3452