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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92276476_92276582_R

Intron Information:

Intron Rank:
138946
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
92276476 - 92276582
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTACCACAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
ACATTCTCAGCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.7
37
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
53
0.07
1.1
50.8
37.4
Minor 5ss
26.2
-2.7
2.9
29.6
43.4
Minor BPS
48.8
-0.1
1.8
57.61
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022257
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044794
92275999 - 92286699
10701
ENSAPLT00000026300
92275999 - 92286699
10701