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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92276658_92281090_R

Intron Information:

Intron Rank:
138947
Intron Class:
major
Intron Phase:
Intron Coordinates:
92276658 - 92281090
Intron Length:
4433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAC
U12 Branch Point Sequence:
ACCCTCATATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
74.9
35.3
Major BPS
66
0.4
1.1
57.8
38.6
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
33.5
-1.9
3.4
47.6
48
Minor BPS
43
-0.5
1.7
47.19
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022257
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026300
92275999 - 92286699
10701