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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92414579_92415012_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92414579 - 92415012
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTCACA
Flanking Amino Acid:
TLFGFDSDDESA*
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.2
0.86
0.7
83.7
30.9
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
63.3
0.41
1.9
80.03
36.1

Associated Gene:

Gene:
ZNF654
Ensembl Gene ID:
ENSAPLG00000016548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026299
92414571 - 92446131
31561