About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92417315_92418819_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92417315 - 92418819
Intron Length:
1505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
CATACTATGATT
Flanking Amino Acid:
FPFMKVIKDEVGEDGLQICV
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
75.1
0.62
1
65.6
41
Major PPT
88.4
0.86
0.6
84.2
23.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
49
0
1.6
65.22
39.7

Associated Gene:

Gene:
ZNF654
Ensembl Gene ID:
ENSAPLG00000016548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026299
92414571 - 92446131
31561