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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92424472_92428367_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92424472 - 92428367
Intron Length:
3896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTTAAT
5'SS Class:
major
3'SS Sequence:
CTTTTCTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTGCCTTTAAAT
Flanking Amino Acid:
LKAKPVSQELVNKYLSSENP
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
80
34.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
36.4
-1.5
3
51.3
45.2
Minor BPS
71
0.74
1.4
82.74
38.2

Associated Gene:

Gene:
ZNF654
Ensembl Gene ID:
ENSAPLG00000016548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026299
92414571 - 92446131
31561