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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92430668_92434991_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92430668 - 92434991
Intron Length:
4324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
GTTTGGTTGACT
Flanking Amino Acid:
HVQYVLSSLALSFFELLLFF
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75.4
33.7
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
85.4
0.8
0.7
84.5
30.4
Minor 5ss
38.6
-1.3
2.7
49.8
40.3
Minor BPS
52.2
0.15
2.5
79.87
42.4

Associated Gene:

Gene:
ZNF654
Ensembl Gene ID:
ENSAPLG00000016548
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026299
92414571 - 92446131
31561