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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92459771_92466245_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92459771 - 92466245
Intron Length:
6475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
MLAQSNYQVYGFDASDCPVE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.1
38.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.7
0.85
0.6
83.7
24.6
Minor 5ss
37.8
-1.4
3.1
48.2
47.4
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014918
92459686 - 92471548
11863