About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92467772_92468868_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92467772 - 92468868
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AATGCAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATGCTAATA
Flanking Amino Acid:
SENIITTSSENTTSISEESQ
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.4
0.28
1
57.1
42.6
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
47.5
-0.1
2.3
68.18
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014918
92459686 - 92471548
11863