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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92469007_92469898_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92469007 - 92469898
Intron Length:
892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTGAAAC
Flanking Amino Acid:
CMFSCLRRHHAKQKRTPLTP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
76.5
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.5
0.78
0.6
84.6
23.2
Minor 5ss
28.6
-2.5
3.2
36.4
42
Minor BPS
54
0.11
1.7
68.34
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014325
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014918
92459686 - 92471548
11863