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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92514807_92515419_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92514807 - 92515419
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTCTC
5'SS Class:
major
3'SS Sequence:
TCTCTTCTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTTCAAAA
Flanking Amino Acid:
PERNLARTGWVLPVCSKEKA
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
67.1
44.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.2
0.54
0.9
69.5
36.8
Minor 5ss
36.9
-1.5
3.3
44.4
43.5
Minor BPS
58.4
0.26
1.6
69.76
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029613
92513337 - 92521790
8454