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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92515566_92515967_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92515566 - 92515967
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTCAGTACA
5'SS Class:
major
3'SS Sequence:
GCTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAGAA
U12 Branch Point Sequence:
CCTGCCTGAGCA
Flanking Amino Acid:
LDLPMDSLAQGQDSAMAPSV
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
71.6
40.2
Major BPS
45.9
-0.2
1.2
38.4
41.7
Major PPT
75.7
0.58
0.8
69
31.7
Minor 5ss
31
-2.2
2.4
27.5
35.4
Minor BPS
49.1
-0
1.9
59.78
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020929
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040683
92513337 - 92521790
8454
ENSAPLT00000035348
92513337 - 92530812
17476
ENSAPLT00000029613
92513337 - 92521790
8454