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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92539023_92540799_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92539023 - 92540799
Intron Length:
1777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAG
U12 Branch Point Sequence:
TCAGTGGTGACT
Flanking Amino Acid:
YFRSAQVVHFSNESSTVFYQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
62.2
0.3
1.5
71.4
36.6
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
39.8
-0.7
2.5
58.27
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048118
92538823 - 92546844
8022