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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92540871_92541800_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92540871 - 92541800
Intron Length:
930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTCTCTCCAAG
Flanking Amino Acid:
HLFIDDITKKLTDVYSSSPA
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
76.3
0.59
1
75.7
33.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
45.4
-0.5
2.1
58.13
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048118
92538823 - 92546844
8022