Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92550390_92552731_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

92550390 - 92552731

Intron Length:

2342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACATGG

5'SS Class:

major

3'SS Sequence:

CCCTTCATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

ACACCCTTCATT

Flanking Amino Acid:

NLNGGIDACQGDSGGPLACT

Intron Amino Acid Position:

147

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

63.4

43.8

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

75.7

0.58

0.8

73.5

29.9

Minor 5ss

42.9

-0.8

2.9

56.6

47.5

Minor BPS

55.1

0.24

1.8

68.59

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003490

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003551

92550231 - 92556126

5896

ENSAPLT00000038062

92545934 - 92558076

12143