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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92554733_92556088_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92554733 - 92556088
Intron Length:
1356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
ACTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTCTAAAAAC
Flanking Amino Acid:
KASYACVLHSRYSAPSGWRA
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.6
0.73
0.8
76.1
31.8
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
48.4
-0.1
2
65.33
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003490
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003551
92550231 - 92556126
5896