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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92562885_92563803_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92562885 - 92563803
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATTAGAAAT
Flanking Amino Acid:
DKDWLEIEGVRYCKDNSEDI
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.4
0.64
1
77.7
36.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
44.8
-0.3
1.7
63.48
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018682
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044297
92562743 - 92568891
6149