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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92563917_92564622_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92563917 - 92564622
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TGTCCTTTTATT
Flanking Amino Acid:
PNIDCSWIIRAPLPAYKLSL
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.5
0.82
0.7
85.4
28
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
62
0.46
1.6
78.15
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018682
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044297
92562743 - 92568891
6149