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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92568099_92568852_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92568099 - 92568852
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTTCAGACAC
Flanking Amino Acid:
MLKSAVSFDLYAKP
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
82.6
0.73
0.8
80.5
31.5
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
46
-0.3
2
65.27
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018682
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044297
92562743 - 92568891
6149