Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92574619_92576485_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

92574619 - 92576485

Intron Length:

1867

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTATGTATC

5'SS Class:

strong_major

3'SS Sequence:

ATATTCTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TAGATTTTAAAT

Flanking Amino Acid:

LMSGKRDGCKGDSGGPLSCQ

Intron Amino Acid Position:

772

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

0.9

80.7

31.7

Major BPS

90.4

0.7

90.2

19.3

Major PPT

80.1

0.68

0.8

78.4

35.3

Minor 5ss

48.1

-0.2

2.4

63.2

35.1

Minor BPS

0.36

1.4

70.66

40.2

Associated Gene:

Gene:

TMPRSS7

Ensembl Gene ID:

ENSAPLG00000003248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003308

92574448 - 92610884

36437