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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92578855_92579040_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
92578855 - 92579040
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCCAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ACTTTTTGAAGA
Flanking Amino Acid:
VSAAHCFQGSKLADPRAWRA
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
75.5
40.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
63.6
0.31
1
56.1
39.1
Minor 5ss
42.8
-0.8
2.9
58
40.6
Minor BPS
50.5
0.01
1.7
61.51
39.1

Associated Gene:

Gene:
TMPRSS7
Ensembl Gene ID:
ENSAPLG00000003248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047637
92572585 - 92604914
32330
ENSAPLT00000003308
92574448 - 92610884
36437