Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92579219_92580768_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

92579219 - 92580768

Intron Length:

1550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTCCC

5'SS Class:

major

3'SS Sequence:

ATATCCCTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

GTAACCTGAAAT

Flanking Amino Acid:

CTDGSDESSCSCGSSKSSNL

Intron Amino Acid Position:

577

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

1.1

63.8

40.9

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

78.4

0.64

0.9

74.6

35.4

Minor 5ss

37.7

-1.4

2.9

51.8

38.4

Minor BPS

58.4

0.34

1.6

73.62

41.9

Associated Gene:

Gene:

TMPRSS7

Ensembl Gene ID:

ENSAPLG00000003248

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047637

92572585 - 92604914

32330

ENSAPLT00000003308

92574448 - 92610884

36437