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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92600501_92601256_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92600501 - 92601256
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTGACAATAATT
Flanking Amino Acid:
VTWTLLWLFIVQAESKDVLY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
89.3
0.88
0.7
84.9
29.9
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
52.4
0.15
1.9
75.18
41.3

Associated Gene:

Gene:
TMPRSS7
Ensembl Gene ID:
ENSAPLG00000003248
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047637
92572585 - 92604914
32330
ENSAPLT00000003308
92574448 - 92610884
36437