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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92630291_92635176_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
92630291 - 92635176
Intron Length:
4886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GATTTCTTATAT
Flanking Amino Acid:
DIFQTVDLWEGKDMAAVQRT
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.5
0.73
0.9
73.4
41.9
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
59.5
0.38
1.7
75.14
41

Associated Gene:

Gene:
TAGLN3
Ensembl Gene ID:
ENSAPLG00000003083
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003143
92625485 - 92636954
11470