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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_92635352_92636230_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92635352 - 92636230
Intron Length:
879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
GTTTCTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAC
U12 Branch Point Sequence:
TTCTTTCTACTT
Flanking Amino Acid:
HFQTWLMDGTLLCKLINSLH
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
63.9
0.35
1.3
64.5
42.5
Major PPT
83.2
0.75
0.8
81
31
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
49
0
1.9
71.16
41

Associated Gene:

Gene:
TAGLN3
Ensembl Gene ID:
ENSAPLG00000003083
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003143
92625485 - 92636954
11470